CDAC shall also setup a Linux based Open Source PARAM Supercomputing Cluster consisting of 5-nodes; 1-master and 4-compute nodes with low latency Infiniband interconnect. This facility also includes 100TB of storage. Interconnects are low latency high-speed network which include Infiniband, Gigabit and Ethernet switches along with essential software. One 42U racks with required number of power sockets, Cables and Connectors. This facility will be deployed at NUST, Windhoek, Namibia.
The facility will be used for running various applications from different domain areas like Bioinformatics, Climatology, Astrophysics, Computational Fluid Dynamics, Computational Chemistry, Molecular Dynamics, Finite Element Analysis, Agriculture etc., CDAC will also provide demonstration in Applications from Climatology and Bioinformatics domain.
This Facility will give boost to current research on High performance computing by adopting next generation Hybrid architecture. It will help the users and researchers to prepare their code for future architecture.
It will also comprise of CDAC's indigenous products InClus, Onama and CHReME:
A robust backup solution has been proposed to mitigate any storage system failure. Secondary storage will be based on Tape. Sizing will be done to accommodate both normal daily backup and long-term archives. Management, Monitoring and Remote support via Internet and software’s are also proposed.
Scientist’s exchange program for HPC training and joint collaborative activities have been proposed as per the detailed annexure. Porting of following scientific and engineering applications in the areas of Bioinformatics, Climatology, Astrophysics, Computational Fluid Dynamics, Computational Chemistry, Molecular Dynamics, Finite Element Analysis, Agriculture etc., would be carried out on x86-64 architecture. Also, selected applications available on Nvidia's GPGPU and Intel MIC Card will be ported on these architectures respectively. CDAC will also provide demonstration in Applications from Climatology and Bioinformatics domain.
• T-Coffee • Biopython • CGView: Circular Genome Viewer • ClustalW • FASTA • PHYLIP (PHYLogeny Inference Package) • Glimmer • mpiBLAST: also BLAST and NCBI-Blast • Gromacs • EMBOSS • HMMER • MPI-Hmmer • MrBayes